Accession
MI0002824
Description
Pan troglodytes
ptr-mir-196a-2 precursor miRNA
Sequence
5809
reads,
62.0
reads per million, 16 experiments
ugcucgcucagcugaucuguggcuUAGGUAGUUUCAUGUUGUUGGGauugaguuuugaacUCGGCAACAAGAAACUGCCUGAguuacaucagucgguuuucgucgagggc
..(((((..(((((((.((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...)))))))...).))))...
..(((((..(((((((.((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...)))))))...).))))...
Structure
-ug - -uc --c A a gag cucg c agcugau uguggcuUAGGUAGUUUC UGUUGUUGGG uu u |||| | ||||||| |||||||||||||||||| |||||||||| || gagc g uuggcug acauugAGUCCGUCAAAG ACAACGGCUc aa u cgg u cuu acu A - guu
Annotation confidence
High
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.
Genome context
chr12: 35785465-35785574 [-]
Database links
Mature ptr-miR-196a-5p
| Accession | MIMAT0002522 |
| Description | Pan troglodytes ptr-miR-196a-5p mature miRNA |
| Sequence | 25 - UAGGUAGUUUCAUGUUGUUGGG - 46 |
| Evidence | not_experimental |
Mature ptr-miR-196a-2-3p
| Accession | MIMAT0052230 |
| Description | Pan troglodytes ptr-miR-196a-2-3p mature miRNA |
| Sequence | 61 - UCGGCAACAAGAAACUGCCUGA - 82 |
| Evidence | not_experimental |
References
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