Stem-loop ptr-mir-204

Accession

MI0002838

Description

Pan troglodytes ptr-mir-204 precursor miRNA

Literature search

3 open access papers mention ptr-mir-204
(27 sentences)

Sequence

10405 reads, 118.0 reads per million, 24 experiments

ggcuacagucuuucuucaugugacucguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggagGCUGGGAAGGCAAAGGGACGUUCaauugucaucacuggc
.....((((..........(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))))).))))..

Structure

ggcua    cuuucuucau     ucg     U          A     U    gagaau 
     cagu          gugac   uggac UCCCUUUGUC UCCUA GCCU      a
     ||||          |||||   ||||| |||||||||| ||||| ||||      u
     guca          uacug   aCUUG AGGGAAACGG AGGGU CGga      a
---cg    ---------c     uua     C          A     -    ggaagu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 47963400-47963509 [-]

Mature ptr-miR-204-5p

• Accession: MIMAT0002535
• Description: Pan troglodytes ptr-miR-204-5p mature miRNA
• Sequence: 33 - UUCCCUUUGUCAUCCUAUGCCU - 54
• Evidence: not_experimental

Mature ptr-miR-204-3p

• Accession: MIMAT0052231
• Description: Pan troglodytes ptr-miR-204-3p mature miRNA
• Sequence: 72 - GCUGGGAAGGCAAAGGGACGUUC - 94
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24