Stem-loop ggo-mir-204

Accession

MI0002839

Description

Gorilla gorilla ggo-mir-204 precursor miRNA

Literature search

1 open access papers mention ggo-mir-204
(1 sentences)

Sequence

476 reads, 38.0 reads per million, 4 experiments

ggcuacagucuuucuucaugugacucguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggagGCUGGGAAGGCAAAGGGACGUucaauugucaucacuggc
.....((((..........(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))))).))))..

Structure

ggcua    cuuucuucau     ucg     U          A     U    gagaau 
     cagu          gugac   uggac UCCCUUUGUC UCCUA GCCU      a
     ||||          |||||   ||||| |||||||||| ||||| ||||      u
     guca          uacug   acuUG AGGGAAACGG AGGGU CGga      a
---cg    ---------c     uua     C          A     -    ggaagu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 52424837-52424946 [-]

Mature ggo-miR-204-5p

• Accession: MIMAT0002536
• Description: Gorilla gorilla ggo-miR-204-5p mature miRNA
• Sequence: 33 - UUCCCUUUGUCAUCCUAUGCCU - 54
• Evidence: not_experimental

Mature ggo-miR-204-3p

• Accession: MIMAT0061266
• Description: Gorilla gorilla ggo-miR-204-3p mature miRNA
• Sequence: 72 - GCUGGGAAGGCAAAGGGACGU - 92
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24