Stem-loop ptr-mir-205

Accession

MI0002847

Description

Pan troglodytes ptr-mir-205 precursor miRNA

Sequence

aaagauccucagacaauccaugugcuucucuugUCCUUCAUUCCACCGGAGUCUGucucauacccaaccagauuucaguggagugaaguucaggaggcauggagcugaca
........((((.(..(((((((....((((((..(((((((((((.((((((((.............)))))))).)))))))))))..))))))))))))))))))..

Structure

aaagaucc    a aa       gcuu      UC           C        ucuca 
        ucag c  uccaugu    cucuug  CUUCAUUCCAC GGAGUCUG     u
        |||| |  |||||||    ||||||  ||||||||||| ||||||||     a
        aguc g  agguacg    gaggac  gaagugaggug cuuuagac     c
------ac    - --       ----      uu           a        caacc 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 188324972-188325081 [+]

Mature ptr-miR-205

• Accession: MIMAT0002544
• Description: Pan troglodytes ptr-miR-205 mature miRNA
• Sequence: 34 - UCCUUCAUUCCACCGGAGUCUG - 55
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24