Stem-loop ptr-mir-214

Accession

MI0002857

Description

Pan troglodytes ptr-mir-214 precursor miRNA

Literature search

5 open access papers mention ptr-mir-214
(9 sentences)

Sequence

5594 reads, 95.0 reads per million, 24 experiments

ggccuggcuggacagaguugucaugugucuGCCUGUCUACACUUGCUGUGCagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGUcacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure

ggccu      acaga           u          ACA            aacau 
     ggcugg     guugucaugug cuGCCUGUCU   CUUGCUGUGCag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           U          CAC            cacuc 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 150502000-150502109 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-214

Mature ptr-miR-214-5p

• Accession: MIMAT0052232
• Description: Pan troglodytes ptr-miR-214-5p mature miRNA
• Sequence: 31 - GCCUGUCUACACUUGCUGUGC - 51
• Evidence: not_experimental

Mature ptr-miR-214-3p

• Accession: MIMAT0002554
• Description: Pan troglodytes ptr-miR-214-3p mature miRNA
• Sequence: 71 - ACAGCAGGCACAGACAGGCAGU - 92
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24