miRBase entry: ppa-mir-216

Stem-loop ppa-mir-216

Accession

MI0002865

Description

Pan paniscus ppa-mir-216 precursor miRNA

Sequence

gauggcugugaguuggcuUAAUCUCAGCUGGCAACUGUGagauguucauacaaucccucacaguggucucugggauuaugcuaaacagagcaauuuccuagcccucacga
((.(((((.((((((((.(((((((((..(((.((((((((.(((....)))....)))))))).))).))))))))).)))))..........))).))))).))....

Structure

----  u     u   ----------     u         CU   A        ---a   u 
    ga ggcug gag          uuggc UAAUCUCAG  GGC ACUGUGag    ugu c
    || ||||| |||          ||||| |||||||||  ||| ||||||||    |||  
    cu ccgau cuu          aaucg auuaggguc  cug ugacacuc    aca a
agca  c     c   uaacgagaca     u         -u   g        ccua   u

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr2A: 57281586-57281695 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-216

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-216

Accession	MIMAT0002562
Description	Pan paniscus ppa-miR-216 mature miRNA
Sequence	19 - UAAUCUCAGCUGGCAACUGUG - 39
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24