Stem-loop mml-mir-223

Accession

MI0002897

Description

Macaca mulatta mml-mir-223 precursor miRNA

Literature search

24 open access papers mention mml-mir-223
(68 sentences)

Sequence

2968891 reads, 2989.0 reads per million, 144 experiments

cccggccuccugcagugccacgcucCGUGUAUUUGACAAGCUGAGUUGGacacuccgugugguagagUGUCAGUUUGUCAAAUACCCCAAgugcggcauaugcuuaccag
...........((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).))).......

Structure

cccggccuccu   -     a    cC U              GAGUUG       cgu 
           gca gugcc cgcu  G GUAUUUGACAAGCU      Gacacuc   g
           ||| ||||| ||||  | ||||||||||||||      |||||||   u
           cgu uacgg gugA  C CAUAAACUGUUUGA      CUGUgag   g
----gaccauu   a     c    AC C              ------       aug 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

X: 62621312-62621421 [+]

Mature mml-miR-223-5p

• Accession: MIMAT0051608
• Description: Macaca mulatta mml-miR-223-5p mature miRNA
• Sequence: 26 - CGUGUAUUUGACAAGCUGAGUUGG - 49
• Evidence: not_experimental

Mature mml-miR-223-3p

• Accession: MIMAT0002588
• Description: Macaca mulatta mml-miR-223-3p mature miRNA
• Sequence: 68 - UGUCAGUUUGUCAAAUACCCCAA - 90
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24