Stem-loop ptr-mir-223

Accession

MI0002898

Description

Pan troglodytes ptr-mir-223 precursor miRNA

Literature search

9 open access papers mention ptr-mir-223
(38 sentences)

Sequence

1828 reads, 17.0 reads per million, 24 experiments

ccuggccuccugcagugccacgcucCGUGUAUUUGACAAGCUGAGUUGgacacuccaugugguagagUGUCAGUUUGUCAAAUACCCCAAgugcggcacaugcuuaccag
.((((......((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).)))...))))

Structure

c    ccuccu   -     a    cC U              GAGUUG       cau 
 cugg      gca gugcc cgcu  G GUAUUUGACAAGCU      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg gugA  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    AC C              ------       aug 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 65052616-65052725 [+]

Mature ptr-miR-223-5p

• Accession: MIMAT0052235
• Description: Pan troglodytes ptr-miR-223-5p mature miRNA
• Sequence: 26 - CGUGUAUUUGACAAGCUGAGUUG - 48
• Evidence: not_experimental

Mature ptr-miR-223-3p

• Accession: MIMAT0002589
• Description: Pan troglodytes ptr-miR-223-3p mature miRNA
• Sequence: 68 - UGUCAGUUUGUCAAAUACCCCAA - 90
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24