Stem-loop ggo-mir-223

Accession

MI0002899

Description

Gorilla gorilla ggo-mir-223 precursor miRNA

Literature search

1 open access papers mention ggo-mir-223
(2 sentences)

Sequence

770 reads, 48.0 reads per million, 4 experiments

ccuggccuccugcagugccacgcucCGUGUAUUUGACAAGCUGAGUUGgacacuccaugugguagagUGUCAGUUUGUCAAAUACCCCAagugcggcacaugcuuaccag
.((((......((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).)))...))))

Structure

c    ccuccu   -     a    cC U              GAGUUG       cau 
 cugg      gca gugcc cgcu  G GUAUUUGACAAGCU      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    AC C              ------       aug 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 65760965-65761074 [+]

Mature ggo-miR-223-5p

• Accession: MIMAT0061269
• Description: Gorilla gorilla ggo-miR-223-5p mature miRNA
• Sequence: 26 - CGUGUAUUUGACAAGCUGAGUUG - 48
• Evidence: experimental

Mature ggo-miR-223-3p

• Accession: MIMAT0002590
• Description: Gorilla gorilla ggo-miR-223-3p mature miRNA
• Sequence: 68 - UGUCAGUUUGUCAAAUACCCCA - 89
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24