miRBase entry: ppy-mir-224

Stem-loop ppy-mir-224

Accession

MI0002906

Description

Pongo pygmaeus ppy-mir-224 precursor miRNA

Sequence

gggcuuuCAAGUCACUAGUGGUUCCGUUUAguagaugauugugcauuguuucaaaauggugcccuagugacuacaaagccc
(((((((..(((((((((.(((.((((((.(.(((((((.....)))))))).)))))).))))))))))))..)))))))

Structure

       CA         U   U      A u       u 
gggcuuu  AGUCACUAG GGU CCGUUU g agaugau g
|||||||  ||||||||| ||| |||||| | ||||||| u
cccgaaa  ucagugauc ccg gguaaa c uuuguua g
       ca         -   u      a -       c

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 152092436-152092516 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-224

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-224

Accession	MIMAT0002597
Description	Pongo pygmaeus ppy-miR-224 mature miRNA
Sequence	8 - CAAGUCACUAGUGGUUCCGUUUA - 30
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24