miRBase entry: ppa-mir-197

Stem-loop ppa-mir-197


Accession
MI0002913
Description
Pan paniscus ppa-mir-197 precursor miRNA


Sequence


ggcugugccggguagagagggcagugggagguaagagcucuucacccUUCACCACCUUCUCCACCCAGCauggcc
((((((((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).))))))))

Structure
        c    a       ca     a   -   a 
ggcugugc gggu gagaggg  guggg ggu aag g
|||||||| |||| |||||||  ||||| ||| |||  
ccgguaCG CCCA CUCUUCC  CACUU cca uuc c
        A    C       AC     c   c   u 


Annotation confidence Low
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 111204127-111204201 [+]

Database links

Mature ppa-miR-197

Accession MIMAT0002604
Description Pan paniscus ppa-miR-197 mature miRNA
Sequence 48 - UUCACCACCUUCUCCACCCAGC - 69
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24