Stem-loop ppy-mir-198

Accession

MI0002917

Description

Pongo pygmaeus ppy-mir-198 precursor miRNA

Sequence

ucauuGGUCCAGAGGGGAGAUAGGuuccugugauuuuuccuucuucucuguagaauaaauga
(((((..((.(.((((((((.(((..............))))))))))).).))...)))))

Structure

     -GG  C G        U   uuccug 
ucauu   UC A AGGGGAGA AGG      u
|||||   || | |||||||| |||       
aguaa   ag u ucucuucu ucc      g
     aua  a g        -   uuuuua 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr3: 12266031-12266092 [+]

Mature ppy-miR-198

• Accession: MIMAT0002608
• Description: Pongo pygmaeus ppy-miR-198 mature miRNA
• Sequence: 6 - GGUCCAGAGGGGAGAUAGG - 24
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24