miRBase entry: ppa-mir-1

Stem-loop ppa-mir-1

Accession

MI0002930

Description

Pan paniscus ppa-mir-1 precursor miRNA

Sequence

accuacucagaguacauacuucuuuauguacccauaugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAuuuuugguaggc
.((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).)))))).

Structure

a      c                     ac     ug aca 
 ccuacu agaguacauacuucuuuaugu  ccaua  a   u
 |||||| |||||||||||||||||||||  |||||  |    
 ggaugg uuuuAUGUAUGAAGAAAUGUA  GGUau  u   a
c      u                     -A     cg aac

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr18: 18704313-18704397 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-1

Accession	MIMAT0002621
Description	Pan paniscus ppa-miR-1 mature miRNA
Sequence	53 - UGGAAUGUAAAGAAGUAUGUA - 73
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24