Accession
MI0002933
Description
Pan troglodytes
ptr-mir-181a-1 precursor miRNA
Sequence
301661
reads,
2530.0
reads per million, 24 experiments
ugaguuuugagguugcuucagugAACAUUCAACGCUGUCGGUGAGUUUggaauuaaaaucaaaACCAUCGACCGUUGAUUGUACCcuauggcuaaccaucaucuacucca
.((((..((((((((((..((.(.(((.((((((..(((((((.((((.((.......)).))))))))))))))))).))).).))..))).)))).)))...))))..
.((((..((((((((((..((.(.(((.((((((..(((((((.((((.((.......)).))))))))))))))))).))).).))..))).)))).)))...))))..
Structure
-u -uu - - uc u A U CU A g au gagu uga gguu gcu ag g ACA UCAACG GUCGGUG GUUU ga u |||| ||| |||| ||| || | ||| |||||| ||||||| |||| || a cuca acu ccaa cgg uc C UGU AGUUGC CAGCUAC CAaa cu a ac ucu a u ua C A U -- - a aa
Annotation confidence
High
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.
Genome context
chr1: 177685358-177685467 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-181a-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ptr-miR-181a-5p
| Accession | MIMAT0002505 |
| Description | Pan troglodytes ptr-miR-181a-5p mature miRNA |
| Sequence | 24 - AACAUUCAACGCUGUCGGUGAGUUU - 48 |
| Evidence | not_experimental |
Mature ptr-miR-181a-3p
| Accession | MIMAT0002624 |
| Description | Pan troglodytes ptr-miR-181a-3p mature miRNA |
| Sequence | 64 - ACCAUCGACCGUUGAUUGUACC - 85 |
| Evidence | not_experimental |
References
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