miRBase entry: ggo-mir-181b

Stem-loop ggo-mir-181b


Accession
MI0002938
Description
Gorilla gorilla ggo-mir-181b precursor miRNA

Literature search
1 open access papers mention ggo-mir-181b
(8 sentences)

Sequence


ccugugcagagauuauuuuuuaaaaggucacaaucAACAUUCAUUGCUGUCGGUGGGUUgaacuguguggacaagcucacugaacaaugaaugcaacuguggccccgcuu
.........................(((((((.....(((((((((...((((((((((....(((....))))))))))))).)))))))))....)))))))......

Structure
ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaac   g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU    ugu u
                         |||||||     |||||||||   ||||||||||    |||  
                         ccggugu     guaaguaac   agucacucga    aca g
-------------------uucgcc       -caac         --a          ----   g 


Annotation confidence Low
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 178420004-178420113 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ggo-mir-181b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-181b

Accession MIMAT0002630
Description Gorilla gorilla ggo-miR-181b mature miRNA
Sequence 36 - AACAUUCAUUGCUGUCGGUGGGUU - 59
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24