miRBase entry: ggo-mir-181b

Stem-loop ggo-mir-181b

Accession

MI0002938

Description

Gorilla gorilla ggo-mir-181b precursor miRNA

Literature search

1 open access papers mention ggo-mir-181b
(8 sentences)

Sequence

ccugugcagagauuauuuuuuaaaaggucacaaucAACAUUCAUUGCUGUCGGUGGGUUgaacuguguggacaagcucacugaacaaugaaugcaacuguggccccgcuu
.........................(((((((.....(((((((((...((((((((((....(((....))))))))))))).)))))))))....)))))))......

Structure

ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaac   g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU    ugu u
                         |||||||     |||||||||   ||||||||||    |||  
                         ccggugu     guaaguaac   agucacucga    aca g
-------------------uucgcc       -caac         --a          ----   g

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 178420004-178420113 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-181b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-181b

Accession	MIMAT0002630
Description	Gorilla gorilla ggo-miR-181b mature miRNA
Sequence	36 - AACAUUCAUUGCUGUCGGUGGGUU - 59
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24