Stem-loop ggo-mir-181b

Accession

MI0002938

Description

Gorilla gorilla ggo-mir-181b precursor miRNA

Literature search

2 open access papers mention ggo-mir-181b
(9 sentences)

Sequence

20690 reads, 1688.0 reads per million, 4 experiments

ccugugcagagauuauuuuuuaaaaggucacaaucAACAUUCAUUGCUGUCGGUGGGUUgaacuguguggacaagCUCACUGAACAAUGAAUGCAacuguggccccgcuu
.........................(((((((.....(((((((((...((((((((((....(((....))))))))))))).)))))))))....)))))))......

Structure

ccugugcagagauuauuuuuuaaaa       aucAA         CUG          gaac   g 
                         ggucaca     CAUUCAUUG   UCGGUGGGUU    ugu u
                         |||||||     |||||||||   ||||||||||    |||  
                         ccggugu     GUAAGUAAC   AGUCACUCga    aca g
-------------------uucgcc       -caAC         --A          ----   g 

Annotation confidence Medium

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 178420004-178420113 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-181b

Mature ggo-miR-181b-5p

• Accession: MIMAT0002630
• Description: Gorilla gorilla ggo-miR-181b-5p mature miRNA
• Sequence: 36 - AACAUUCAUUGCUGUCGGUGGGUU - 59
• Evidence: not_experimental

Mature ggo-miR-181b-3p

• Accession: MIMAT0061270
• Description: Gorilla gorilla ggo-miR-181b-3p mature miRNA
• Sequence: 76 - CUCACUGAACAAUGAAUGCA - 95
• Evidence: experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24