miRBase entry: ppy-mir-16-1

Stem-loop ppy-mir-16-1

Accession

MI0002960

Description

Pongo pygmaeus ppy-mir-16-1 precursor miRNA

Sequence

gucagcagugccuUAGCAGCACGUAAAUAUUGGcguuaagauucuaaaauuaucuccaguauuaacugugcugcugaaguaagguugac
((((((..(((.((((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))).)))..))))))

Structure

      ag   c          -  A        c u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG g uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 50305071-50305159 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-16-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-16

Accession	MIMAT0002653
Description	Pongo pygmaeus ppy-miR-16 mature miRNA
Sequence	14 - UAGCAGCACGUAAAUAUUGG - 33
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24