Stem-loop ptr-mir-15a

Accession

MI0002961

Description

Pan troglodytes ptr-mir-15a precursor miRNA

Literature search

10 open access papers mention ptr-mir-15a
(27 sentences)

Sequence

6763 reads, 75.0 reads per million, 24 experiments

ccuuggaguaaagUAGCAGCACAUAAUGGUUUGUGgauuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCAaaaauacaagg
(((((.......(..((((((((..((((((((((.............))))))))))..))))))))..).......)))))

Structure

     gaguaaa UA        UA          gauuu 
ccuug       g  GCAGCACA  AUGGUUUGUG     u
|||||       |  ||||||||  ||||||||||     g
ggaac       C  CGUCGUGU  UACCGGACgu     a
     auaaaaA UC        UA          ggaaa 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 35079678-35079760 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-15a

Mature ptr-miR-15a-5p

• Accession: MIMAT0002654
• Description: Pan troglodytes ptr-miR-15a-5p mature miRNA
• Sequence: 14 - UAGCAGCACAUAAUGGUUUGUG - 35
• Evidence: not_experimental

Mature ptr-miR-15a-3p

• Accession: MIMAT0052242
• Description: Pan troglodytes ptr-miR-15a-3p mature miRNA
• Sequence: 51 - CAGGCCAUAUUGUGCUGCCUCA - 72
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24