Stem-loop ptr-mir-16-1

Accession

MI0002962

Description

Pan troglodytes ptr-mir-16-1 precursor miRNA

Literature search

3 open access papers mention ptr-mir-16-1
(6 sentences)

Sequence

22221 reads, 351.0 reads per million, 24 experiments

gucagcagugccuUAGCAGCACGUAAAUAUUGGCGUuaagauucuaaaauuaucuCCAGUAUUAACUGUGCUGCUGAAguaagguugac
((((((..(((.((((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))).)))..))))))

Structure

      ag   c          -  A        C U   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug AGUCGUCGUG CA UUAUGACC c auu    u
      ga   A          U  A        u u   aaaa 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 35079532-35079620 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-mir-16-1

Mature ptr-miR-16-5p

• Accession: MIMAT0002655
• Description: Pan troglodytes ptr-miR-16-5p mature miRNA
• Sequence: 14 - UAGCAGCACGUAAAUAUUGGCGU - 36
• Evidence: not_experimental

Mature ptr-miR-16-1-3p

• Accession: MIMAT0052303
• Description: Pan troglodytes ptr-miR-16-1-3p mature miRNA
• Sequence: 56 - CCAGUAUUAACUGUGCUGCUGAA - 78
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24