miRBase entry: ppa-mir-92a-1

Stem-loop ppa-mir-92a-1

Accession

MI0002988

Description

Pan paniscus ppa-mir-92a-1 precursor miRNA

Sequence

cuuucuacacagguugggaucgguugcaaugcuguguuucuguauggUAUUGCACUUGUCCCGGCCUGUugaguuugg
....((..((((((((((((.(((.(((((((((((......)))))))))))))).))))))))))))..)).....

Structure

-cuuu  ac            c   u           uu 
     cu  acagguugggau ggu gcaaugcugug  u
     ||  |||||||||||| ||| |||||||||||   
     ga  UGUCCGGCCCUG UCA CGUUAUgguau  c
gguuu  gu            U   -           gu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr13: 91708037-91708114 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppa-mir-92a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-92a

Accession	MIMAT0002685
Description	Pan paniscus ppa-miR-92a mature miRNA
Sequence	48 - UAUUGCACUUGUCCCGGCCUGU - 69
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24