Stem-loop ppa-mir-23a

Accession

MI0003040

Description

Pan paniscus ppa-mir-23a precursor miRNA

Literature search

1 open access papers mention ppa-mir-23a
(2 sentences)

Sequence

ggccggcugggguuccuggggaugggauuugcuuccugucacaaAUCACAUUGCCAGGGAUUUCCaaccgacc
((.(((.((((((((((((.((((.((((((..........)))))).)))).))))))).))))).))).))

Structure

  c   c     -       g    g      cuuc 
gg cgg ugggg uuccugg gaug gauuug    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 14130630-14130702 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppa-mir-23a

Mature ppa-miR-23a-3p

• Accession: MIMAT0002743
• Description: Pan paniscus ppa-miR-23a-3p mature miRNA
• Sequence: 45 - AUCACAUUGCCAGGGAUUUCC - 65
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24