Stem-loop ptr-mir-27a

Accession

MI0003049

Description

Pan troglodytes ptr-mir-27a precursor miRNA

Literature search

7 open access papers mention ptr-mir-27a
(14 sentences)

Sequence

16853 reads, 147.0 reads per million, 24 experiments

cugaggagcAGGGCUUAGCUGCUUGUGAGCAggguccacaccaagucgugUUCACAGUGGCUAAGUUCCGCcccccag
(((.((.((.(((((((((((((.(((((((.((.(........))).)))))))))))))))))))).)).)).)))

Structure

   a  a  A             U       g  u cac 
cug gg gc GGGCUUAGCUGCU GUGAGCA gg c   a
||| || || ||||||||||||| ||||||| || |    
gac cc CG CUUGAAUCGGUGA CACUUgu cu g   c
   c  c  C             -       g  - aac 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr19: 14579286-14579363 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-mir-27a

Mature ptr-miR-27a-5p

• Accession: MIMAT0052247
• Description: Pan troglodytes ptr-miR-27a-5p mature miRNA
• Sequence: 10 - AGGGCUUAGCUGCUUGUGAGCA - 31
• Evidence: not_experimental

Mature ptr-miR-27a-3p

• Accession: MIMAT0002750
• Description: Pan troglodytes ptr-miR-27a-3p mature miRNA
• Sequence: 51 - UUCACAGUGGCUAAGUUCCGC - 71
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24