miRBase entry: mml-mir-96

Stem-loop mml-mir-96

Accession

MI0003085

Description

Macaca mulatta mml-mir-96 precursor miRNA

Literature search

7 open access papers mention mml-mir-96
(38 sentences)

Sequence

12976 reads, 87.0 reads per million, 123 experiments

uggccgauUUUGGCACUAGCACAUUUUUGCUUGugucucuccgcucugagCAAUCAUGUGCAGUGCCAAUAUGGgaaa
...((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))...

Structure

ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCUU   Gug  u
   || || |||||||| ||||||  ||||||   |||   
   gG UA AACCGUGA CGUGUA  AACgag   cgc  c
aaa  G  U        -      CU      ucu   cu

Annotation confidence High

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

3: 156052910-156052987 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mml-mir-96

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mml-miR-96-5p

Accession	MIMAT0002784
Description	Macaca mulatta mml-miR-96-5p mature miRNA
Sequence	9 - UUUGGCACUAGCACAUUUUUGCUUG - 33
Evidence	not_experimental

Mature mml-miR-96-3p

Accession	MIMAT0051611
Description	Macaca mulatta mml-miR-96-3p mature miRNA
Sequence	51 - CAAUCAUGUGCAGUGCCAAUAUGG - 74
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24