Stem-loop ggo-mir-183

Accession

MI0003088

Description

Gorilla gorilla ggo-mir-183 precursor miRNA

Literature search

1 open access papers mention ggo-mir-183
(7 sentences)

Sequence

ccgcagagugugacuccuguucugugUAUGGCACUGGUAGAAUUCACUGugaacagucucagucagugaauuaccgaagggccauaaacagagcagagacagauccacga
.((..((.(.((.(((.((((((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))))))))).)).)))..)).

Structure

c  ca  g g  a   c        g      A  --    GA        --   ac 
 cg  ga u ug cuc uguucugu UAUGGC CU  GGUA  AUUCACUG  uga  a
 ||  || | || ||| |||||||| |||||| ||  ||||  ||||||||  |||   
 gc  cu a ac gag acgagaca auaccg ga  ccau  uaagugac  acu  g
a  ac  - g  a   -        a      g  ag    --        ug   cu 

Annotation confidence Low

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 129148625-129148734 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ggo-mir-183

Mature ggo-miR-183

• Accession: MIMAT0002787
• Description: Gorilla gorilla ggo-miR-183 mature miRNA
• Sequence: 27 - UAUGGCACUGGUAGAAUUCACUG - 49
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24