Stem-loop ppa-mir-183

Accession

MI0003094

Description

Pan paniscus ppa-mir-183 precursor miRNA

Sequence

ccgcagagugugacuccuguucugugUAUGGCACUGGUAGAAUUCACUGugaacagucucagucagugaauuaccgaagggccauaaacagagcagagacagauccacga
.((..((.(.((.(((.((((((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))))))))).)).)))..)).

Structure

c  ca  g g  a   c        g      A  --    GA        --   ac 
 cg  ga u ug cuc uguucugu UAUGGC CU  GGUA  AUUCACUG  uga  a
 ||  || | || ||| |||||||| |||||| ||  ||||  ||||||||  |||   
 gc  cu a ac gag acgagaca auaccg ga  ccau  uaagugac  acu  g
a  ac  - g  a   -        a      g  ag    --        ug   cu 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 134258009-134258118 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-183

Mature ppa-miR-183

• Accession: MIMAT0002793
• Description: Pan paniscus ppa-miR-183 mature miRNA
• Sequence: 27 - UAUGGCACUGGUAGAAUUCACUG - 49
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24