miRBase entry: ppa-mir-96

Stem-loop ppa-mir-96

Accession

MI0003095

Description

Pan paniscus ppa-mir-96 precursor miRNA

Sequence

uggccgauUUUGGCACUAGCACAUUUUUGCuugugucucuccgcucugagcaaucaugugcagugccaauaugggaaa
...((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))...

Structure

ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCuu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg ua aaccguga cgugua  aacgag   cgc  c
aaa  g  u        -      cu      ucu   cu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 134257796-134257873 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-96

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-96

Accession	MIMAT0002794
Description	Pan paniscus ppa-miR-96 mature miRNA
Sequence	9 - UUUGGCACUAGCACAUUUUUGC - 30
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24