miRBase entry: ppy-mir-92-2

Stem-loop ppy-mir-92-2

Accession

MI0003111

Description

Pongo pygmaeus ppy-mir-92-2 precursor miRNA

Sequence

ucaucccuggguggggauuuguugcauuacuuguguucuauauaaagUAUUGCACUUGUCCCGGCCUGUggaaga
((.(((.(((((.(((((..((.(((.(((((((((...)))).))))).)))))..))))).))))).))).))

Structure

  a   c     g     uu  u   u     -    u 
uc ucc ugggu gggau  gu gca uacuu gugu  
|| ||| ||||| |||||  || ||| ||||| |||| c
ag agg GUCCG CCCUG  CA CGU AUgaa uaua  
  a   U     G     UU  -   U     a    u

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 133612463-133612537 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-92-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-92

Accession	MIMAT0002692
Description	Pongo pygmaeus ppy-miR-92 mature miRNA
Sequence	48 - UAUUGCACUUGUCCCGGCCUGU - 69
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24