Stem-loop osa-MIR530

Accession

MI0003203

Description

Oryza sativa osa-MIR530 precursor miRNA

Literature search

19 open access papers mention osa-MIR530
(36 sentences)

Sequence

504050 reads, 6766.0 reads per million, 116 experiments

gugauagagcUGCAUUUGCACCUGCACCUACAGagaggaagaugaagcagcaagcuagcaauacgugcuugaucgcuauacgcuagcuucuugcacacaauguuguuccuggucucuuccugaucccuAGGUGCAGAGGCAGAUGCAAcuaugucau
((((((.((.(((((((((..(((((((((..((.(((((((.((..(((..(((.((((....((((..((..((((.....)))).))..))))....))))))).))).)))))))))..))..)))))))))..))))))))).)).))))))

Structure

      g  c         AC         CA  -g       u  ag   ca   u    auac    uu  uc    u 
gugaua ag UGCAUUUGC  CUGCACCUA  Ga  aggaaga ga  cag  agc agca    gugc  ga  gcua a
|||||| || |||||||||  |||||||||  ||  ||||||| ||  |||  ||| ||||    ||||  ||  |||| c
uacugu uc ACGUAGACG  GACGUGGAu  cu  uccuucu cu  guc  uug uugu    cacg  cu  cgau g
      a  A         GA         cc  ag       -  -g   -c   -    aaca    uu  -u    c 

Annotation confidence High

Genome context

4: 8303538-8303694 [-]

Mature osa-miR530-5p

• Accession: MIMAT0006787
• Description: Oryza sativa osa-miR530-5p mature miRNA
• Sequence: 11 - UGCAUUUGCACCUGCACCUACAG - 33
• Evidence: experimental ; cloned [2]

Mature osa-miR530-3p

• Accession: MIMAT0002886
• Description: Oryza sativa osa-miR530-3p mature miRNA
• Sequence: 129 - AGGUGCAGAGGCAGAUGCAA - 148
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151


2. PubMed ID: 16126864
   Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice
   "Liu B, Li P, Li X, Liu C, Cao S, Chu C, Cao X"
   "Plant Physiol (2005) 139:296-305