Stem-loop fru-mir-223

Accession

MI0003209

Description

Fugu rubripes fru-mir-223 precursor miRNA

Literature search

1 open access papers mention fru-mir-223
(5 sentences)

Sequence

4503 reads, 51.0 reads per million, 12 experiments

cacuuAGUGUAUUUGACAAGCUGUUCUUGacacucuuuauacgcgagUGUCAGUUUGUCAAAUACCCCaagugaggugucacuugucug
(((((.(.((((((((((((((......(((((((.........))))))))))))))))))))).).)))))................

Structure

----------------     A U              GUUCUU       uuu 
                cacuu G GUAUUUGACAAGCU      Gacacuc   a
                ||||| | ||||||||||||||      |||||||   u
                gugaa C CAUAAACUGUUUGA      CUGUgag   a
gucuguucacugugga     C C              ------       cgc 

Annotation confidence Medium

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042299.1|: 12613223-12613311 [+]

Mature fru-miR-223-5p

• Accession: MIMAT0052808
• Description: Fugu rubripes fru-miR-223-5p mature miRNA
• Sequence: 6 - AGUGUAUUUGACAAGCUGUUCUUG - 29
• Evidence: not_experimental

Mature fru-miR-223-3p

• Accession: MIMAT0002894
• Description: Fugu rubripes fru-miR-223-3p mature miRNA
• Sequence: 48 - UGUCAGUUUGUCAAAUACCCC - 68
• Evidence: not_experimental

References