Stem-loop tni-mir-223

Accession

MI0003210

Description

Tetraodon nigroviridis tni-mir-223 precursor miRNA

Literature search

2 open access papers mention tni-mir-223
(9 sentences)

Sequence

17005 reads, 623.0 reads per million, 3 experiments

caggcccuucacuuAGUGUAUUUGACAAGCUGUGUUUgacacucuguaucugcgagUGUCAGUUUGUCAAAUACCCCaagugagg
......((((((((.(.((((((((((((((......(((((((.((....))))))))))))))))))))))).).))))))))

Structure

caggcc        A U              GUGUUU       u  a 
      cuucacuu G GUAUUUGACAAGCU      gacacuc gu u
      |||||||| | ||||||||||||||      ||||||| ||  
      ggagugaa C CAUAAACUGUUUGA      CUGUgag cg c
------        C C              ------       -  u 

Annotation confidence Medium

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 92603284-92603368 [-]

Mature tni-miR-223-5p

• Accession: MIMAT0052926
• Description: Tetraodon nigroviridis tni-miR-223-5p mature miRNA
• Sequence: 15 - AGUGUAUUUGACAAGCUGUGUUU - 37
• Evidence: not_experimental

Mature tni-miR-223-3p

• Accession: MIMAT0002895
• Description: Tetraodon nigroviridis tni-miR-223-3p mature miRNA
• Sequence: 57 - UGUCAGUUUGUCAAAUACCCC - 77
• Evidence: not_experimental

References