Accession
MI0003214
Description
Tetraodon nigroviridis
tni-let-7e precursor miRNA
Sequence
315061
reads,
11539.0
reads per million, 3 experiments
gcuguccuuggggcUGAGGUAGUAGAUUGAAUAGUUgugggguugugugaccucuaugugagauaacUAUACAAUCUACUGUCUUUCccaaggagacagc
(((((((((((((..((((((((((((((.((((((((((((((....))))))........)))))))).)))))))))))))))))))))))..))))
(((((((((((((..((((((((((((((.((((((((((((((....))))))........)))))))).)))))))))))))))))))))))..))))
Structure
-- cU A -------- g
gcug uccuugggg GAGGUAGUAGAUUG AUAGUUgu gggguu u
|||| ||||||||| |||||||||||||| |||||||| ||||||
cgac aggaaccCU UUCUGUCAUCUAAC UAUcaaua cuccag g
ag -- A gaguguau u
Annotation confidence
High
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
9: 4666591-4666690 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-let-7e
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature tni-let-7e-5p
| Accession | MIMAT0002899 |
| Description | Tetraodon nigroviridis tni-let-7e-5p mature miRNA |
| Sequence | 15 - UGAGGUAGUAGAUUGAAUAGUU - 36 |
| Evidence | not_experimental |
Mature tni-let-7e-3p
| Accession | MIMAT0052927 |
| Description | Tetraodon nigroviridis tni-let-7e-3p mature miRNA |
| Sequence | 68 - UAUACAAUCUACUGUCUUUC - 87 |
| Evidence | not_experimental |
References
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