Stem-loop fru-mir-221

Accession

MI0003221

Description

Fugu rubripes fru-mir-221 precursor miRNA

Literature search

1 open access papers mention fru-mir-221
(3 sentences)

Sequence

219629 reads, 2401.0 reads per million, 12 experiments

ccugaACCUGGCAUACAAUGUAGAUUUcugugugcuuggauucuacAGCUACAUUGUCUGCUGGGUUUCcggauagc
((.((((((((((.(((((((((....(((((...........)))))))))))))).))))))))))..)).....

Structure

-----  -u          U         AUUU     ugcu 
     cc  gaACCUGGCA ACAAUGUAG    cugug    u
     ||  |||||||||| |||||||||    |||||    g
     gg  UUUGGGUCGU UGUUACAUC    GAcau    g
cgaua  cC          C         ----     cuua 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042285.1|: 13966032-13966108 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-221

Mature fru-miR-221-5p

• Accession: MIMAT0052816
• Description: Fugu rubripes fru-miR-221-5p mature miRNA
• Sequence: 6 - ACCUGGCAUACAAUGUAGAUUU - 27
• Evidence: not_experimental

Mature fru-miR-221-3p

• Accession: MIMAT0002906
• Description: Fugu rubripes fru-miR-221-3p mature miRNA
• Sequence: 47 - AGCUACAUUGUCUGCUGGGUUUC - 69
• Evidence: not_experimental

References