Stem-loop tni-mir-142a

Accession

MI0003224

Description

Tetraodon nigroviridis tni-mir-142a precursor miRNA

Literature search

2 open access papers mention tni-mir-142a
(9 sentences)

Sequence

56882 reads, 2085.0 reads per million, 3 experiments

guacagugcagucaucCAUAAAGUAGAAAGCACUACUaaacucuucgccacaguGUAGUGUUUCCUACUUUAUGGAUgaguguacuguug
..((((((((.(((((((((((((((.(((((((((..................))))))))).))))))))))))))).))))))))..

Structure

gu        g               A         Uaaacucu 
  acagugca ucaucCAUAAAGUAG AAGCACUAC        u
  |||||||| ||||||||||||||| |||||||||         
  ugucaugu agUAGGUAUUUCAUC UUUGUGAUG        c
gu        g               C         ugacaccg 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

7: 2557207-2557296 [+]

Mature tni-miR-142a-5p

• Accession: MIMAT0002909
• Description: Tetraodon nigroviridis tni-miR-142a-5p mature miRNA
• Sequence: 17 - CAUAAAGUAGAAAGCACUACU - 37
• Evidence: not_experimental

Mature tni-miR-142a-3p

• Accession: MIMAT0052931
• Description: Tetraodon nigroviridis tni-miR-142a-3p mature miRNA
• Sequence: 55 - GUAGUGUUUCCUACUUUAUGGAU - 77
• Evidence: not_experimental

References