Stem-loop fru-mir-25

Accession

MI0003229

Description

Fugu rubripes fru-mir-25 precursor miRNA

Literature search

1 open access papers mention fru-mir-25
(1 sentences)

Sequence

347887 reads, 4927.0 reads per million, 12 experiments

gcugguguugagAGGCGGAGACUUGGGCAAUUGCcggccaucacagagggCAUUGCACUUGUCUCGGUCUGAcagugccggc
((((((((((..((((.(((((..(.(((((.(((.............)))))))).)..))))).))))..))))))))))

Structure

          ag    G     UU G     U   ggcca 
gcugguguug  AGGC GAGAC  G GCAAU GCc     u
||||||||||  |||| |||||  | ||||| |||     c
cggccgugac  UCUG CUCUG  C CGUUA Cgg     a
          AG    G     UU A     -   gagac 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042298.1|: 12011889-12011970 [-]

Mature fru-miR-25-5p

• Accession: MIMAT0052824
• Description: Fugu rubripes fru-miR-25-5p mature miRNA
• Sequence: 13 - AGGCGGAGACUUGGGCAAUUGC - 34
• Evidence: not_experimental

Mature fru-miR-25-3p

• Accession: MIMAT0002914
• Description: Fugu rubripes fru-miR-25-3p mature miRNA
• Sequence: 51 - CAUUGCACUUGUCUCGGUCUGA - 72
• Evidence: not_experimental

References