Stem-loop tni-mir-25

Accession

MI0003230

Description

Tetraodon nigroviridis tni-mir-25 precursor miRNA

Sequence

329330 reads, 12056.0 reads per million, 3 experiments

gcugguguugagAGGCGGAGACUUGGGCAAUUGccggccaucacagagggCAUUGCACUUGUCUCGGUCUGAcagugccggc
((((((((((..((((.(((((..(.(((((.(((.............)))))))).)..))))).))))..))))))))))

Structure

          ag    G     UU G     U   ggcca 
gcugguguug  AGGC GAGAC  G GCAAU Gcc     u
||||||||||  |||| |||||  | ||||| |||     c
cggccgugac  UCUG CUCUG  C CGUUA Cgg     a
          AG    G     UU A     -   gagac 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

1: 5569529-5569610 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from tni-mir-25

Mature tni-miR-25-5p

• Accession: MIMAT0052932
• Description: Tetraodon nigroviridis tni-miR-25-5p mature miRNA
• Sequence: 13 - AGGCGGAGACUUGGGCAAUUG - 33
• Evidence: not_experimental

Mature tni-miR-25-3p

• Accession: MIMAT0002915
• Description: Tetraodon nigroviridis tni-miR-25-3p mature miRNA
• Sequence: 51 - CAUUGCACUUGUCUCGGUCUGA - 72
• Evidence: not_experimental

References