Stem-loop tni-let-7a-3

Accession

MI0003245

Description

Tetraodon nigroviridis tni-let-7a-3 precursor miRNA

Sequence

23945260 reads, 878149.0 reads per million, 3 experiments

caaggUGAGGUAGUAGGUUGUAUAGUUugugggauggcuuggauccuacucagauuauaacuaUACAGUCUAUUACCUUCCUUGagagguacaaug
(((((.(((((((((((((((((((((.(((((((.......))))))).........))))))))))))))))))))))))))............

Structure

------------     U                     --------u       gg 
            caagg GAGGUAGUAGGUUGUAUAGUU         gugggau  c
            ||||| |||||||||||||||||||||         |||||||  u
            GUUCC UUCCAUUAUCUGACAUaucaa         cauccua  u
guaacauggaga     -                     uauuagacu       gg 

Annotation confidence Medium

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

11: 8661669-8661764 [-]

Mature tni-let-7a-5p

• Accession: MIMAT0002929
• Description: Tetraodon nigroviridis tni-let-7a-5p mature miRNA
• Sequence: 6 - UGAGGUAGUAGGUUGUAUAGUU - 27
• Evidence: not_experimental

Mature tni-let-7a-3-3p

• Accession: MIMAT0052939
• Description: Tetraodon nigroviridis tni-let-7a-3-3p mature miRNA
• Sequence: 64 - UACAGUCUAUUACCUUCCUUG - 84
• Evidence: not_experimental

References