Stem-loop tni-mir-142b

Accession

MI0003262

Description

Tetraodon nigroviridis tni-mir-142b precursor miRNA

Literature search

2 open access papers mention tni-mir-142b
(9 sentences)

Sequence

56577 reads, 2074.0 reads per million, 3 experiments

acagugcugucaccCAUAAAGUAGAAAGCACUACUAaacgucuuuacacaguGUAGUGUUUCCUACUUUAUGGAUgagugcacugu
(((((((..(((.(((((((((((.(((((((((..................))))))))).))))))))))).)))..)))))))

Structure

       ug   c           A         UAaacguc 
acagugc  uca cCAUAAAGUAG AAGCACUAC        u
|||||||  ||| ||||||||||| |||||||||         
ugucacg  agU GGUAUUUCAUC UUUGUGAUG        u
       ug   A           C         ugacacau 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

16: 3999086-3999171 [+]

Mature tni-miR-142b-5p

• Accession: MIMAT0002946
• Description: Tetraodon nigroviridis tni-miR-142b-5p mature miRNA
• Sequence: 15 - CAUAAAGUAGAAAGCACUACUA - 36
• Evidence: not_experimental

Mature tni-miR-142b-3p

• Accession: MIMAT0052942
• Description: Tetraodon nigroviridis tni-miR-142b-3p mature miRNA
• Sequence: 53 - GUAGUGUUUCCUACUUUAUGGAU - 75
• Evidence: not_experimental

References