Stem-loop fru-mir-30b

Accession

MI0003263

Description

Fugu rubripes fru-mir-30b precursor miRNA

Sequence

287364 reads, 3606.0 reads per million, 12 experiments

uuccggcucaguuggUGUAAACAUCCUACACUCAGCUgugauccuuugcggcagaggCUGAGAGAAGGUUGUUUACUUGAacuggcugga
.((((((.(((((.(.(((((((.(((.(.(((((((.....((.....))....))))))).).))).))))))).).)))))))))))

Structure

u      u     g U       U   A A       gugau  u 
 uccggc caguu g GUAAACA CCU C CUCAGCU     cc u
 |||||| ||||| | ||||||| ||| | |||||||     || u
 aggucg gucaA U CAUUUGU GGA G GAGUCgg     gg g
-      -     G U       U   A A       -agac  c 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042296.1|: 6485620-6485709 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-30b

Mature fru-miR-30b-5p

• Accession: MIMAT0002947
• Description: Fugu rubripes fru-miR-30b-5p mature miRNA
• Sequence: 16 - UGUAAACAUCCUACACUCAGCU - 37
• Evidence: not_experimental

Mature fru-miR-30b-3p

• Accession: MIMAT0052841
• Description: Fugu rubripes fru-miR-30b-3p mature miRNA
• Sequence: 58 - CUGAGAGAAGGUUGUUUACUUGA - 80
• Evidence: not_experimental

References