Accession
MI0003264
Description
Tetraodon nigroviridis
tni-mir-30b precursor miRNA
Sequence
5732
reads,
209.0
reads per million, 3 experiments
agauggUGUAAACAUCCUACACUCAGCUgugaucuuuugccgcagaggCUGAGAGAAGGUUGUUUACUUGaacuggcugga
((..((((((((((.(((.(.((((((((((.........)))...))))))).).))).)))))))....)))..))...
((..((((((((((.(((.(.((((((((((.........)))...))))))).).))).)))))))....)))..))...
Structure
--- au ---- U A A --- auc ag ggU GUAAACA CCU C CUCAGCU gug u || ||| ||||||| ||| | ||||||| ||| u uc uca CAUUUGU GGA G GAGUCgg cgc u agg gg aGUU U A A aga cgu
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
21: 5299008-5299088 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-mir-30b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature tni-miR-30b-5p
| Accession | MIMAT0002948 |
| Description | Tetraodon nigroviridis tni-miR-30b-5p mature miRNA |
| Sequence | 7 - UGUAAACAUCCUACACUCAGCU - 28 |
| Evidence | not_experimental |
Mature tni-miR-30b-3p
| Accession | MIMAT0052943 |
| Description | Tetraodon nigroviridis tni-miR-30b-3p mature miRNA |
| Sequence | 49 - CUGAGAGAAGGUUGUUUACUUG - 70 |
| Evidence | not_experimental |
References
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