Stem-loop fru-mir-30d

Accession

MI0003265

Description

Fugu rubripes fru-mir-30d precursor miRNA

Literature search

1 open access papers mention fru-mir-30d
(1 sentences)

Sequence

1274212 reads, 17963.0 reads per million, 12 experiments

ugcacauggcaguuugaggcUGUAAACAUCCCCGACUGGAAGcugucacucagaagagCUUUCAGUCUGAUGUUUACCACcuccgaccgccuccugcu
.(((...(((.(((.((((..(((((((((...(((((((((((.((.....))..))))))))))).)))))))))..)))).))).)))...))).

Structure

u   cau   a   u    cU         CCC           -g  a 
 gca   ggc guu gagg  GUAAACAUC   GACUGGAAGcu  uc c
 |||   ||| ||| ||||  |||||||||   |||||||||||  || u
 cgu   ccg cag cucC  CAUUUGUAG   CUGACUUUCga  ag c
u   ccu   c   c    AC         --U           ga  a 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042296.1|: 6485441-6485538 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-30d

Mature fru-miR-30d-5p

• Accession: MIMAT0002949
• Description: Fugu rubripes fru-miR-30d-5p mature miRNA
• Sequence: 21 - UGUAAACAUCCCCGACUGGAAG - 42
• Evidence: not_experimental

Mature fru-miR-30d-3p

• Accession: MIMAT0052842
• Description: Fugu rubripes fru-miR-30d-3p mature miRNA
• Sequence: 59 - CUUUCAGUCUGAUGUUUACCAC - 80
• Evidence: not_experimental

References