Stem-loop tni-mir-30d

Accession

MI0003266

Description

Tetraodon nigroviridis tni-mir-30d precursor miRNA

Sequence

24827 reads, 909.0 reads per million, 3 experiments

uggcaguuugaggcUGUAAACAUCCCCGACUGGAAGcugucacucagcagagCUUUCAGUCUGAUGUUUACCCCcuccgaccgccu
.(((.(((.((((..(((((((((...(((((((((((.(........).))))))))))).)))))))))..)))).))).))).

Structure

u   a   u    cU         CCC           g cac 
 ggc guu gagg  GUAAACAUC   GACUGGAAGcu u   u
 ||| ||| ||||  |||||||||   ||||||||||| |    
 ccg cag cucC  CAUUUGUAG   CUGACUUUCga a   c
u   c   c    CC         --U           g cga 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

21: 5298825-5298910 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-30d

Mature tni-miR-30d-5p

• Accession: MIMAT0002950
• Description: Tetraodon nigroviridis tni-miR-30d-5p mature miRNA
• Sequence: 15 - UGUAAACAUCCCCGACUGGAAG - 36
• Evidence: not_experimental

Mature tni-miR-30d-3p

• Accession: MIMAT0052944
• Description: Tetraodon nigroviridis tni-miR-30d-3p mature miRNA
• Sequence: 53 - CUUUCAGUCUGAUGUUUACCCC - 74
• Evidence: not_experimental

References