Accession
MI0003269
Description
Fugu rubripes
fru-mir-23b precursor miRNA
Sequence
119276
reads,
1403.0
reads per million, 12 experiments
ggcugugaGGGUUCCUGGCGUGCUGAUUUgugacuuaugauaaaAUCACAUUGCCAGGGAUUACCAcacagcc
(((((((.((((((((((((((.((((((.............)))))))).))))))))))..)).)))))))
(((((((.((((((((((((((.((((((.............)))))))).))))))))))..)).)))))))
Structure
a -- - C gugac
ggcugug GG GUUCCUGGCG UG UGAUUU u
||||||| || |||||||||| || |||||| u
ccgacac CC UAGGGACCGU AC ACUAaa a
A AU U - auagu
Annotation confidence
High
Do you think this miRNA is real?
Comments
This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
ref|NC_042305.1|: 11164918-11164990 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from fru-mir-23b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature fru-miR-23b-5p
| Accession | MIMAT0052844 |
| Description | Fugu rubripes fru-miR-23b-5p mature miRNA |
| Sequence | 9 - GGGUUCCUGGCGUGCUGAUUU - 29 |
| Evidence | not_experimental |
Mature fru-miR-23b-3p
| Accession | MIMAT0002953 |
| Description | Fugu rubripes fru-miR-23b-3p mature miRNA |
| Sequence | 45 - AUCACAUUGCCAGGGAUUACCA - 66 |
| Evidence | not_experimental |
References
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