Stem-loop fru-mir-196a-2

Accession

MI0003271

Description

Fugu rubripes fru-mir-196a-2 precursor miRNA

Sequence

25815 reads, 420.0 reads per million, 11 experiments

ucgagugguuUAGGUAGUUUCAUGUUGUUGGGguccauuucaaacuCUGCAACAUGAAACUGUCUUAauugcccca
....((((((.(((((((((((((((((.(((............))).))))))))))))))))).))))))....

Structure

ucga      U                 U   gucca 
    gugguu AGGUAGUUUCAUGUUGU GGG     u
    |||||| ||||||||||||||||| |||      
    cguuaA UCUGUCAAAGUACAACG Cuc     u
accc      U                 U   aaacu 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042296.1|: 3892054-3892129 [+]

Mature fru-miR-196a-5p

• Accession: MIMAT0002955
• Description: Fugu rubripes fru-miR-196a-5p mature miRNA
• Sequence: 11 - UAGGUAGUUUCAUGUUGUUGGG - 32
• Evidence: not_experimental

Mature fru-miR-196a-2-3p

• Accession: MIMAT0052845
• Description: Fugu rubripes fru-miR-196a-2-3p mature miRNA
• Sequence: 47 - CUGCAACAUGAAACUGUCUUA - 67
• Evidence: not_experimental

References