Stem-loop tni-mir-365

Accession

MI0003284

Description

Tetraodon nigroviridis tni-mir-365 precursor miRNA

Sequence

1707 reads, 63.0 reads per million, 3 experiments

cagcaagaaaagugAGGGACUUUUAGGGGCAGCUGUGUuuuauuaacccagucaUAAUGCCCCUAAAAAUCCUUAUugcucuugcaauuguc
..((((((..((((((((..(((((((((((((((.(((.....))).)))).....))))))))))).))))))))..)))))).......

Structure

-----ca      aa        AC           -----    U   u 
       gcaaga  agugAGGG  UUUUAGGGGCA     GCUG GUu u
       ||||||  ||||||||  |||||||||||     |||| ||| a
       cguucu  uUAUUCCU  AAAAUCCCCGU     ugac caa u
cuguuaa      cg        -A           AAUac    c   u 

Annotation confidence High

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 38921278-38921369 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tni-mir-365

Mature tni-miR-365-5p

• Accession: MIMAT0052950
• Description: Tetraodon nigroviridis tni-miR-365-5p mature miRNA
• Sequence: 15 - AGGGACUUUUAGGGGCAGCUGUGU - 38
• Evidence: not_experimental

Mature tni-miR-365-3p

• Accession: MIMAT0002968
• Description: Tetraodon nigroviridis tni-miR-365-3p mature miRNA
• Sequence: 55 - UAAUGCCCCUAAAAAUCCUUAU - 76
• Evidence: not_experimental

References