Stem-loop fru-mir-217

Accession

MI0003289

Description

Fugu rubripes fru-mir-217 precursor miRNA

Literature search

2 open access papers mention fru-mir-217
(8 sentences)

Sequence

185062 reads, 2156.0 reads per million, 12 experiments

augaagagccuucuugaugcggaugaUACUGCAUCAGGAACUGAUUGGcugaugcuuuuuaccCAACAGUACCUGAUGCAUUGCCUucagcauugaaaga
..((((...))))(((((((.((.(.((.(((((((((.((((.((((.(((......))).)))))))).))))))))).)).).)).)))))))....

Structure

augaagagccuuc       g  u a  C         A    A    c   ug 
             uugaugc ga g UA UGCAUCAGG ACUG UUGG uga  c
             ||||||| || | || ||||||||| |||| |||| |||   
             aguuacg cu C GU ACGUAGUCC UGAC AACc auu  u
---------agaa       a  U C  U         A    -    c   uu 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042288.1|: 12072959-12073058 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-217

Mature fru-miR-217-5p

• Accession: MIMAT0002971
• Description: Fugu rubripes fru-miR-217-5p mature miRNA
• Sequence: 27 - UACUGCAUCAGGAACUGAUUGG - 48
• Evidence: not_experimental

Mature fru-miR-217-3p

• Accession: MIMAT0052855
• Description: Fugu rubripes fru-miR-217-3p mature miRNA
• Sequence: 64 - CAACAGUACCUGAUGCAUUGCCU - 86
• Evidence: not_experimental

References