Stem-loop fru-let-7i

Accession

MI0003295

Description

Fugu rubripes fru-let-7i precursor miRNA

Literature search

2 open access papers mention fru-let-7i
(2 sentences)

Sequence

11561152 reads, 104922.0 reads per million, 12 experiments

cuggcUGAGGUAGUAGUUUGUGCUGUUgguuggguugugacacugcccgcuauggagaugaCUGCGCAAGCUACUGCCUUGCUA
.((((.(((((((((((((((((.((((((.((((.((...)).)))))))........))).)))))))))))))))))))))

Structure

c    U                 U   --------   u    u  g 
 uggc GAGGUAGUAGUUUGUGC GUU        ggu gggu gu  
 |||| ||||||||||||||||| |||        ||| |||| || a
 AUCG UUCCGUCAUCGAACGCG Cag        ucg cccg ca  
-    -                 U   uagaggua   -    u  c 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042293.1|: 11452746-11452829 [-]

Mature fru-let-7i-5p

• Accession: MIMAT0002977
• Description: Fugu rubripes fru-let-7i-5p mature miRNA
• Sequence: 6 - UGAGGUAGUAGUUUGUGCUGUU - 27
• Evidence: not_experimental

Mature fru-let-7i-3p

• Accession: MIMAT0052858
• Description: Fugu rubripes fru-let-7i-3p mature miRNA
• Sequence: 62 - CUGCGCAAGCUACUGCCUUGCUA - 84
• Evidence: not_experimental

References