Stem-loop fru-mir-196a-1

Accession

MI0003299

Description

Fugu rubripes fru-mir-196a-1 precursor miRNA

Sequence

25826 reads, 421.0 reads per million, 11 experiments

agcuggagcgugguuUAGGUAGUUUCAUGUUGUUGGGgauggcuuccUGGCUCGGCAACAAGAAACUGCcuugauuacgucaguu
.((((..((((((((.((((((((((.((((((((((...((...))...)))))))))).)))))))))).)))))))))))).

Structure

a    ga        U          A          gau  c 
 gcug  gcgugguu AGGUAGUUUC UGUUGUUGGG   gg  
 ||||  |||||||| |||||||||| ||||||||||   || u
 ugac  ugcauuag ucCGUCAAAG ACAACGGCUC   cc  
u    --        u          A          GGU  u 

Annotation confidence Medium

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042287.1|: 10324540-10324624 [+]

Mature fru-miR-196a-5p

• Accession: MIMAT0002955
• Description: Fugu rubripes fru-miR-196a-5p mature miRNA
• Sequence: 16 - UAGGUAGUUUCAUGUUGUUGGG - 37
• Evidence: not_experimental

Mature fru-miR-196a-1-3p

• Accession: MIMAT0052846
• Description: Fugu rubripes fru-miR-196a-1-3p mature miRNA
• Sequence: 48 - UGGCUCGGCAACAAGAAACUGC - 69
• Evidence: not_experimental

References