Stem-loop fru-mir-130

Accession

MI0003311

Description

Fugu rubripes fru-mir-130 precursor miRNA

Sequence

3454 reads, 42.0 reads per million, 12 experiments

uguuguuguccucuGCCCUUUUUCUGUUGCACCACUggacacugagaugagCAGUGCAAUAUUAAAAGGGCAUuggcug
.......(.((..(((((((((..((((((((..((.............))..))))))))..)))))))))..)))..

Structure

uguuguu u  uc         UC        CA  ggaca 
       g cc  uGCCCUUUU  UGUUGCAC  CU     c
       | ||  |||||||||  ||||||||  ||     u
       c gg  ACGGGAAAA  AUAACGUG  ga     g
-----gu -  uU         UU        AC  guaga 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042290.1|: 11254198-11254276 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-130

Mature fru-miR-130-5p

• Accession: MIMAT0052862
• Description: Fugu rubripes fru-miR-130-5p mature miRNA
• Sequence: 15 - GCCCUUUUUCUGUUGCACCACU - 36
• Evidence: not_experimental

Mature fru-miR-130-3p

• Accession: MIMAT0002989
• Description: Fugu rubripes fru-miR-130-3p mature miRNA
• Sequence: 52 - CAGUGCAAUAUUAAAAGGGCAU - 73
• Evidence: not_experimental

References