Accession
MI0003314
Description
Tetraodon nigroviridis
tni-let-7a-2 precursor miRNA
Sequence
26670512
reads,
977953.0
reads per million, 3 experiments
guccuuuggggUGAGGUAGUAGGUUGUAUAGUUuuaggguuauacccuuccugucagauaacuAUACAACUUACUGUCUUUCCU
........(((.(((((((((((((((((((((..(((((...)))))...........))))))))))))))))))))).)))
........(((.(((((((((((((((((((((..(((((...)))))...........))))))))))))))))))))).)))
Structure
guccuuug U ---------uu u
ggg GAGGUAGUAGGUUGUAUAGUU agggu
||| ||||||||||||||||||||| ||||| a
UCC UUCUGUCAUUCAACAUAucaa uccca
-------- U uagacuguccu u
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
13: 9220391-9220474 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-let-7a-2
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature tni-let-7a-5p
| Accession | MIMAT0002929 |
| Description | Tetraodon nigroviridis tni-let-7a-5p mature miRNA |
| Sequence | 12 - UGAGGUAGUAGGUUGUAUAGUU - 33 |
| Evidence | not_experimental |
Mature tni-let-7a-2-3p
| Accession | MIMAT0052941 |
| Description | Tetraodon nigroviridis tni-let-7a-2-3p mature miRNA |
| Sequence | 64 - AUACAACUUACUGUCUUUCCU - 84 |
| Evidence | not_experimental |
References
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