Stem-loop fru-let-7d

Accession

MI0003319

Description

Fugu rubripes fru-let-7d precursor miRNA

Literature search

2 open access papers mention fru-let-7d
(6 sentences)

Sequence

829634 reads, 10088.0 reads per million, 12 experiments

ugugcucugcagugUGAGGUAGUUGGUUGUAUGGUUucgcauaauaaacagcacggagauaaCUGUACAACCUUCUAGCUUUCCcugcggagucac
.(((((((((((.(.(((.(((..((((((((((((((...................)).))))))))))))..))).))).).)))))))).)))

Structure

u   -        u U   G   UU            -  gcauaaua 
 gug cucugcag g GAG UAG  GGUUGUAUGGUU uc        a
 ||| |||||||| | ||| |||  |||||||||||| ||        a
 cac gaggcguc C UUC AUC  CCAACAUGUCaa ag        c
-   u        C U   G   UU            u  aggcacga 

Annotation confidence Medium

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042291.1|: 12321858-12321953 [-]

Mature fru-let-7d-5p

• Accession: MIMAT0002995
• Description: Fugu rubripes fru-let-7d-5p mature miRNA
• Sequence: 15 - UGAGGUAGUUGGUUGUAUGGUU - 36
• Evidence: not_experimental

Mature fru-let-7d-3p

• Accession: MIMAT0052866
• Description: Fugu rubripes fru-let-7d-3p mature miRNA
• Sequence: 63 - CUGUACAACCUUCUAGCUUUCC - 84
• Evidence: not_experimental

References