Stem-loop tni-mir-21-1

Accession

MI0003326

Description

Tetraodon nigroviridis tni-mir-21-1 precursor miRNA

Literature search

1 open access papers mention tni-mir-21-1
(5 sentences)

Sequence

1685440 reads, 61724.0 reads per million, 3 experiments

auugucgucuuuacaucugucacucucggccugucaaaUAGCUUAUCAGACUGGUGUUGGCuguuaagauugcaaggcgacaacagucugaaggcugucugacauuucgggcucuuucaucu
........................(((((..(((((.(((((((.((((((((.(((((.((((.......)).)).))))).))))))))))))))).)))))..)))))...........

Structure

auugucgucuuuacaucugucacu     cc     a       A        G     G  -  ua 
                        cucgg  uguca aUAGCUU UCAGACUG UGUUG Cu gu  a
                        |||||  ||||| ||||||| |||||||| ||||| || ||  g
                        gggcu  acagu ugucgga agucugac acagc ga cg  a
-------------ucuacuuucuc     uu     c       -        a     g  a  uu 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

7: 1044906-1045027 [-]

Mature tni-miR-21-5p

• Accession: MIMAT0003000
• Description: Tetraodon nigroviridis tni-miR-21-5p mature miRNA
• Sequence: 39 - UAGCUUAUCAGACUGGUGUUGGC - 61
• Evidence: not_experimental

References